PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_25.46
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 564aa    MW: 62116.4 Da    PI: 8.6304
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_25.46genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-0593115123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  ++C++C+k F r  nL+ H r H
  evm.model.supercontig_25.46  93 FVCEICNKGFQRDQNLQLHRRGH 115
                                  89*******************88 PP

2zf-C2H211.90.00068169191123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  +kC +C+k +  +s+ k H +t+
  evm.model.supercontig_25.46 169 WKCDKCSKKYAVQSDWKAHSKTC 191
                                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-592115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-692115No hitNo description
PROSITE profilePS5015710.94993115IPR007087Zinc finger, C2H2
SMARTSM003550.01793115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM00355250134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-6164189No hitNo description
SMARTSM00355150169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MMKDLLFHHQ QQQQQQQLME ENMSNLTSAS GEASVNSSGN RTESGTNYPQ QYLGTPPQIQ  60
PPPKKKRNLP GNPDPDAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK  120
LKQRTTKEVR KKVYVCPESS CVHHEPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV  180
QSDWKAHSKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESARAITT GAANTNPLLS  240
SHLQLPGSSS SHINLQVPQD LHAFSLKKEQ QNYSSLRPEM PPWLASCPTQ PQHQSLDHVS  300
SSSSSTFSTR LDHHHQDFTV QQKSIHDHHH TPNPNPSLGP TMLPPSYHPT PSPHMSATAL  360
LQKAAQMGAT MSSSCKTTGS SSPTPPALIR PHQQPHVSAD SGHSATTTTA GFGLNLSSRE  420
ELQVASGYVH HVLPDPFGTR PAGGLFQDMM CSLSSAATGF DQQGVNNSFD ESFGGILNAK  480
KYFSLDEVRK EDMCSTITRT NITNVSKNDH HDQQTGGIKG GEGLTRDFLG LKAFSHTDIL  540
SIAGLSNCMN TTTSQDQSSQ KPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119131KLKQRTTKEVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442745.10.0PREDICTED: protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F51e-126IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0B0NH250.0A0A0B0NH25_G
STRINGVIT_09s0002g02300.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-109indeterminate(ID)-domain 7